454 whole genome shotgun sequencing of genomic DNA library '454-578' ... - SRA

SRX005715: 454 whole genome shotgun sequencing of genomic DNA library '454-578' containing sample '38349857_F_15'
1 LS454 (454 GS FLX) run: 418 spots, 117,586 bases, 334,383b downloads

UUID: 9c17da32-c974-44d6-9f27-da60247f0828

Design: 454 sequencing of Phytophthora infestans T30-4 via random selection

Submitted by: Broad Institute (BI)

Study: WGS sequencing and assembly project at the Broad Institute

PRJNA17665 • SRP000883 • All experiments • All runs

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The Broad Institute sequenced the genome of <i>Phytophthora infestans</i> strain T30-4 at 8X coverage using whole genome shotgun (WGS) sequencing. Assembly 1 consists of 18,288 contigs in 4,921 scaffolds. The genome assembly will undergo automated annotation.

Sample: Generic sample from Phytophthora infestans T30-4

SAMN00103134 • SRS003335 • All experiments • All runs

Organism: Phytophthora infestans T30-4

Library:

Name: 454-578

Instrument: 454 GS FLX

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Spot descriptor:

5 forward

Experiment attributes: (show all 4 attributes...) (hide...)

gssr_id: 17563.2

lsid: BROAD:SEQUENCING_SAMPLE:17563.2

material_type: Genomic DNA

project: L36012

Pipeline: show...hide...

Name	Step	Program	Version
base caller	2007-12-11 01:12:36.0	454BaseCaller	1.1.02.15

Runs: 1 run, 418 spots, 117,586 bases, 334,383b

Run	# of Spots	# of Bases	Size	Published
SRR017685	418	117,586	334,383b	2009-06-24

ID:: 5974

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